PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016453137.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 468aa    MW: 51971.3 Da    PI: 9.1921
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016453137.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-055373323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++Cgk F r  nL+ H r H
  XP_016453137.1 53 CEICGKGFQRDQNLQLHRRGH 73
                    *******************88 PP

2zf-C2H213.50.00021127149123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_016453137.1 127 WKCEKCSKRYAVQSDWKAHSKTC 149
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.23E-65073No hitNo description
Gene3DG3DSA:3.30.160.604.0E-55073IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0765173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4895173IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-5115148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.23E-6122147No hitNo description
SMARTSM00355130127147IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MTEEVILSGF NSIEGSNPLP LKKKRNLPGN PDPEAEVIAL SPKTLMATNR FLCEICGKGF  60
QRDQNLQLHR RGHNLPWKLK QRTSKEVRKR VYVCPEKSCV HHHASRALGD LTGIKKHYCR  120
KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT IFSRRDSFVT HRAFCDALAE  180
ETARVTAASN MHNPLAGNNI DYHFIGSPLG PNMAQHFSSL FKPISTNNEN SDPIMRRDQL  240
SLWNMGQVSQ QQETIGNNNL QEIHQISPLI QTSAAAVYDT NTLLAPRSNP PPVNYNHVNW  300
QQLTNTSSAN ISVPSLFSTQ HQSHQQITPS STASMSATAL LQKAAQIGAT TTTTDPSFLG  360
NNFGMNNCNV KNNNVQVQEV NNNKFCGFYV TTTNNSISTS LGSEVDQGSV NDFSTLNQLQ  420
MYNPPSKRRH IITREDSVTG GGVGGQTRDF LGVGVQSICH PSSINGWI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-132HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765644.10.0PREDICTED: zinc finger protein MAGPIE-like
RefseqXP_009765645.10.0PREDICTED: zinc finger protein MAGPIE-like
RefseqXP_016453136.10.0PREDICTED: zinc finger protein MAGPIE-like
RefseqXP_016453137.10.0PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-155IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLM1AJS60.0M1AJS6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000242720.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-149C2H2 family protein